Please use this identifier to cite or link to this item:
https://dspace.ctu.edu.vn/jspui/handle/123456789/73519
Title: | Bioinformatic approaches for analysis of coral-associated bacteria using programming language |
Authors: | Doan, Thi Nhung Bui, Van Ngoc |
Keywords: | 16S rRNA Acropora tenuis Bioinformatics Coral-associated bacteria R programming language |
Issue Date: | 2020 |
Series/Report no.: | Tạp chí Công nghệ Sinh học;Số 04(18) .- Tr.733-743 |
Abstract: | Recent advances in metagenomics and bioinformatics allow the robust analysis of the composition and abundance of microbial communities, functional genes, and their metabolic pathways. So far, there has been a variety of computational/statistical tools or software for analyzing microbiome, the common problems that occurred in its implementation are, however, the lack of synchronization and compatibility of output/ input data formats between such software. To overcome these challenges, in this study context, we aim to apply the DADA2 pipeline (written in R programming language) instead of using a set of different bioinformatics tools to create our own workflow for microbial community analysis in a continuous and synchronous manner. |
URI: | https://dspace.ctu.edu.vn/jspui/handle/123456789/73519 |
ISSN: | 1811-4989 |
Appears in Collections: | Công nghệ sinh học |
Files in This Item:
File | Description | Size | Format | |
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_file_ Restricted Access | 2.44 MB | Adobe PDF | ||
Your IP: 18.225.56.181 |
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