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Title: Bioinformatic approaches for analysis of coral-associated bacteria using programming language
Authors: Doan, Thi Nhung
Bui, Van Ngoc
Keywords: 16S rRNA
Acropora tenuis
Coral-associated bacteria
R programming language
Issue Date: 2020
Series/Report no.: Tạp chí Công nghệ Sinh học;Số 04(18) .- Tr.733-743
Abstract: Recent advances in metagenomics and bioinformatics allow the robust analysis of the composition and abundance of microbial communities, functional genes, and their metabolic pathways. So far, there has been a variety of computational/statistical tools or software for analyzing microbiome, the common problems that occurred in its implementation are, however, the lack of synchronization and compatibility of output/ input data formats between such software. To overcome these challenges, in this study context, we aim to apply the DADA2 pipeline (written in R programming language) instead of using a set of different bioinformatics tools to create our own workflow for microbial community analysis in a continuous and synchronous manner.
ISSN: 1811-4989
Appears in Collections:Công nghệ sinh học

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